[A740.Ebook] Download PDF Design and Use of Relational Databases in Chemistry, by TJ O'Donnell

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Optimize Your Chemical Database

Design and Use of Relational Databases in Chemistry helps programmers and users improve their ability to search and manipulate chemical structures and information, especially when using chemical database "cartridges". It illustrates how the organizational, data integrity, and extensibility properties of relational databases are best utilized when working with chemical information.

The author facilitates an understanding of existing relational database schemas and shows how to design new schemas that contain tables of data and chemical structures. By using database extension cartridges, he provides methods to properly store and search chemical structures. He explains how to download and install a fully functioning database using free, open-source chemical extension cartridges within PostgreSQL. The author also discusses how to access a database on a computer network using both new and existing applications.

Through examples of good database design, this book shows you that relational databases are the best way to store, search, and operate on chemical information.

• Sales Rank: #1069349 in Books
• Published on: 2008-12-05
• Original language: English
• Number of items: 1
• Dimensions: 9.10" h x .90" w x 6.20" l, 1.30 pounds
• Binding: Hardcover
• 224 pages

About the Author
President, gNova Inc., San Diego, California, USA

Most helpful customer reviews

3 of 3 people found the following review helpful.
Very helpful in creating a cheminformatic relational database
By Matt Ketterer
I would say the title of this book is quite accurate. It does not cover all the details of implementation, some is left up to the user, but it guides you in the "Design and Use" aspect quite well. It even contains free code along with authors own CHORD package (Based on a commercial product) that he can sell you or you can just use the code from the book which is quite extensive and written in Perl, Python, and C(based on the very useful open-source package Open Babel)that you can use in your postgresql database. While I had to also get a book on postgresql for the technical set up aspects, this book deals with relational database design and how to search and store chemical information in a meaningful way. I would say that it is expertly written, with every chapter useful, and not some books where there is a lot of junk chapters not needed.

One wish I would have liked to see is more on client side setup, and the ability to automatically interact more with the database, but these are things that could possibly come out in the second edition?

4 of 4 people found the following review helpful.
Convincing
By Thompson N. Doman
Relational databases and the relational model are far from new concepts, having first appeared 40 years ago. When we think of where data lives, we usually think of it residing in a relational database of some sort. However, there are domains like chemical informatics where the uptake of these databases is uneven - there are still many cheminformatics scientists who have never written a line of SQL, and still rely on antiquated models of large dataset handling and storage - like flat files in a unix system.
This book aims to change that. From the first sentence of chapter 1: "The goal of this book is to convince you that relational databases are the best way to store, search, and even operate on chemical information." By the time I had finished reading this book, I was indeed convinced. From the fundamentals of relational databases, to SQL, to IT considerations like client/web applications and how to store, search, and manipulate data, O'Donnell moves on to cover how chemistry is actually represented in such databases and what you can do with it. To make this practical he discusses how to implement an actual chemistry Relational Database Management System (RDBMS) in PostgreSQL, a popular open-source RDBMS.
The book is a manageable size - 229 pages - which seems about right, of which 35 or so comprise 9 very helpful Appendices including lots of code snippets, which for me are the best way to learn. This is the kind of book I still keep out on my desk for reference to things like Table A.4 in the back. While this may seem too esoteric to some readers, it is to me an invaluable resource describing the SMARTS (a chemistry substructure specification language) implementation of one of the most popular sets of chemistry "keys" used in cheminformatics practice. Someone so inclined could learn much of the SMARTS language just by studying how these 166 keys are encoded by SMARTS strings. Readers will probably find numerous other things of this nature in the book that can be applied to their own work.
O'Donnell has made a valuable contribution to the domain of chemical informatics, and I hope he convinces others of the power of relational databases in chemistry.

5 of 14 people found the following review helpful.
much improvement needed
By A.Reader1
This is a book on storing and searching chemical structures in relational databases. It has two audiences: 1) scientists such as chemists/biologists/biochemists etc who need to work with modern IT tools like RDBMSs. These people probably do not have formal computer science training and 2) IT professionals like application developers, DB admins, DB programmers who need to provide support to, or develop for, laboratory scientists working with chemical structure data.

All in all, this is a strange book. And not in a good way. Let me explain why.

First, the book has a very "Open Source" feel with the author employing languages like Perl, Python, PHP, Java throughout and an open source DB I've never heard of - PostgreSQL. When you visit the author's website you can see why - he's obviously running his consulting company on this DB and has developed his own data cartridge (CHORD) for storing chemical structures. I've got no problem with anyone running their commercial venture as they see fit but when you write a book on chemical databases you should focus on the technologies the average user is likely to encounter. And that is not open source. This would be tools like Windows, Oracle and MS Visual Studio - VB, C#, C++ and a host of proprietary chemical software.

Second, the first six chapters on database design and related topics are unsuitable for both target audiences. Database design is a very large and important topic. It's difficult to convey all the required information in just 6 chapters covering 70 pages. This text is written at too a high a level for the scientific audience. They would need many other books and lots of hands-on experience to become proficient at design. Then these chapters would make sense. For experienced IT and DB professionals this material is trivial.

Third, there's no discussion at all of desktop chemical databases like ISIS/Base or ChemFinder. This is a significant omission IMHO.

Fourth, with a title like "Design and Use of Relational Databases in Chemistry" I was expecting a major discussion and critical comparison of the various commercial Oracle chemical database cartridges. After all, Oracle dominates the marketplace at places like Big Pharma and large chemical companies. How do these cartridges work? What are the features to look for when buying? What are pros and cons to using these products? How much do they cost (approx.)? How to develop software program using them, what do their code samples look like etc etc. None of that stuff is here.

Fifth, starting around chapter 8 or 9 this book goes off the deep end. It becomes far too technical. The only people interested in this material would be a select group of hardcore database programmers with a very good understanding of chemistry using a relatively uncommon DB called PostgreSQL. This book quickly turns into a work for the author to document the technical aspects of his database(s). Too narrow in scope.

Chapter 13 has useful info on how to construct a schema for chemicals and related experimental data. Chapters 5 and 12 may also be of some use to application developers. However, the coverage of client-side applications is kinda skimpy.

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[R236.Ebook] Free Ebook Chemistry and Biology of Artificial Nucleic AcidsFrom Brand: Wiley-VCH

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• Sales Rank: #6067505 in Books
• Brand: Brand: Wiley-VCH
• Published on: 2012-04-16
• Original language: English
• Dimensions: 9.70" h x 1.30" w x 7.00" l, 3.29 pounds
• Binding: Hardcover
• 568 pages

Features

• Used Book in Good Condition

From the Back Cover
Thirty years of investigations on the chemistry and biology of non-natural nucleic acids have provided us with a wealth of new information, ranging from a deeper understanding of the parameters that influence nucleic acids with cellular factors. There is no part of the nucleic acid structure that has not been touched by chemists, and every chemical modification has resulted in an altered property. The nucleic acid structure, as originally defined by the Watson-Crick double helix, has now been expanded into an entire landscape of new structures adopted by artificial pairing systems. Countless strategies have been developed for the chemical synthesis of these modified nucleic acids. The resulting polymers have found applications in diagnostics, therapeutics, biotechnology, catalysis, sequencing, and nanotechnology, and have had a major impact in the quest for a better understanding of the origin of life. There is hardly another area in bioorganic chemistry that has contributed so much to progress in biology throughout the last decades.
This book combines the contributions of many of the major players in this research field, and covers the synthesis of sugar-, base-, and backbone-modified nucleic acids, their structural characteristics studied by X-ray crystallography, and NMR in solution as well as their chemical and biological properties.

About the Author
Martin Egli studied chemistry and received his doctorate in organic chemistry and chemical crystallography at the Swiss Federal Institute of Technology (ETH) in Z?rich, Switzerland. He has conducted research on the structure and function of native and artificial nucleic acids at the ETH, MIT, and Northwestern University, and currently holds an appointment as Professor of Biochemistry in the School of Medicine at Vanderbilt University, Nashville, Tennessee, USA.

Piet Herdewijn is Professor at the Katholieke Universiteit Leuven, Belgium, and head of the laboratory of medicinal chemistry at the Rega Institute. He obtained his Ph.D. and habilitation from the same university. He was a postdoctoral fellow of the Humboldt Foundation at the University of Konstanz. He has conducted research in bioorganic and medicinal chemistry, mainly in the field of nucleosides, nucleotides, and nucleic acids, at the University of Leuven, the University of Ghent, and the Universit? d'Evry-Val-d'Essonne.

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• Sales Rank: #1079488 in Books
• Published on: 2009-05-01
• Dimensions: 10.00" h x .15" w x 7.00" l,
• Binding: Paperback
• 62 pages

About the Author
The Department of Supreme Wisdom issues publications to the Original man and woman of North America and the world in order to increase the level of consciousness of the Original and help to fulfill the mission of the Honorable Elijah Muhammad wherein all men and women can live with freedom, justice, equality and Peace.

Most helpful customer reviews

1 of 1 people found the following review helpful.
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By wikie lyles
if i could i would like to have my money back for this product...1st the book is not a hard cover which i believed the book would be a hard cover...2nd in the supreme wisdom lesson number 2 there is a mistake in the answer of question number 11...emphatically no...me and my people who have been lost from home for 379 years have tried this so-called mystery god for...(this book has mistakes located in the book) please send my money back...peace

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[M497.Ebook] Free PDF Statistical Tables, by Robert R. Sokal, Rolf F. James

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This separate compendium of tables used with Sokal/Rohlf, Biometry, Third Edition, eliminates the inconvenience of having to turn back and forth within the text to refer to data. It can also be used with other texts, or as an independent research resource.

• Sales Rank: #17306682 in Books
• Published on: 2011-12-28
• Original language: English
• Number of items: 1
• Binding: Hardcover
• 28 pages

From the Back Cover
Created by the authors of Biometry, Fourth Edition, Statistical Tables is an excellent resource for students and researchers that can be used in conjunction with Biometry, Fourth Edition, or as a standalone supplement. Statistical Tables includes new tables and graphs important to the understanding of key concepts in statistics.

NEW TO THIS EDITION
* Revised tables for the delta-corrected Kolmogorov-Smirnov test
* New graphs for estimating power and sample sizes in the analysis of variance, testing correlations, and goodness of fit tests
* New tables for the Shapiro-Wilk test for normality
* New table for Spearman's rank correlation coefficient
* New tables for one- and two-sided Dunnett's tests to compare means against a control
* New table for the maximum studentized range distribution used for multiple comparisons in two-way tables

Please use the following ISBN to order a copy of Biometry, Fourth Edition, with Statistical Tables: 1-4641-1519-2.

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24 of 24 people found the following review helpful.
great collection of statistical tables
By Michael R. Chernick
If you have Sokal and Rohlf's Biometry book it pays to get these tables. They are referenced throughout the book and it is convenient to have them to do most of the problems.
One thing to watch out for is to make sure that the edition of the tables matches the edition of the text. I have the second edition of the book and the third edition of the tables. The authors removed eight tables in the third edition and instead of using the numbering system of the second edition, they switched to letters floowed by double letters after they ran through the alphabet.

There are many useful tables and explanations are given, so they can be used independently of the text. However, if you get the text you will want the tables. The tables are referenced in numerous interesting and instructive examples in the text.

In the Preface to the Second Edition the authors say that the tables are there for pedigogical reasons only and they chose not to include them in the text because in these days pocket calculators can often be used as replacements for tables. Nevertheless without realizing it the reader does become dependent on these tables to get a full understanding of the examples.

If you get the book get the tables also. If you just want to have a reference set of statistical tables they are useful but I much prefer the "Pocket Book of Statistical Tables" by Odeh and Owens.

0 of 0 people found the following review helpful.
Five Stars
By Carlos Valderrama
A must have companion to the book

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Photography is enjoyed by people world-wide and can be a very fulfilling and enjoyable hobby. There are many who transform this hobby into their career, and so a photography business is born. Unfortunately, because these businesses begin with the love of photography, as opposed to strong business principles, they are often met with challenges right from the start. There are an unlimited number of books on the topics of photography and business, however we were unable to find a book that clearly outlines a step-by-step process to pricing photography services and products. In addition, no book under our scrutiny actually spelled out how to plan and organize your photography business volume. We designed this book for photographers who are both just starting out, and for photographers who have been in business for years. This book is not full of promises or “get rich quick” schemes, it is a practical guide to realistic pricing that is necessary to make a comfortable living as a professional photographer.

• Sales Rank: #1806886 in Books
• Published on: 2012-01-27
• Dimensions: 8.50" h x .19" w x 5.50" l,
• Binding: Paperback
• 78 pages

Most helpful customer reviews

2 of 2 people found the following review helpful.
Pricing for Profit
By Pamela Koudijs
Pricing for Profit was informative, useful and enlightening. As a photographer, you are striving to take as many photos as possible, trying to showcase what you can do with a camera. Little thought is given to the business end of your endeavours. Robert and Bryan have put together an easy to use template to help you make your passion profitable.

To have these two talented photographers as my mentors is a gift... I highly recommend this to anyone contemplating taking their business to the next level. I know I will be using it.

Regards,

Pamela Koudijs
Photography by Pamela

1 of 1 people found the following review helpful.
Learned a lot!!
By Bri
There are few business books out there that directly apply to Photographers. The step by step process that is outlined, is easy to follow and will point you in the right direction. Before I read Pricing for Profit, I didn't really have an idea what to base my prices on (other than cost of materials). The book explains how to figure out your pricing, and the need to price it with a number of things in mind in order to make a profit. I'm not the most knowledgeable when it comes to business plans and techniques. After reading Pricing for Profit, I feel well equipped to make my business a success!
Bri
Brianna Z Photography

0 of 0 people found the following review helpful.
The seller was very cooperative and nice in her return emails
By Stephanie N
This book was only eleven pages long not worth $30. Have to return it. The seller was very cooperative and nice in her return emails.

See all 4 customer reviews...

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• Sales Rank: #4568967 in Books
• Published on: 1946
• Binding: Paperback

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